Include Mojo SDK/EDK via fully-qualified paths in Chromium code.

As a followup to the move of the Mojo SDK and EDK to live under //third_party,
this CL updates Chromium code to include SDK/EDK headers via fully-qualified
paths instead of relying on include_dirs that are exported by the Mojo targets.

This CL also includes mechanical updates to DEPS files to satisfy checkdeps.

Review URL: https://codereview.chromium.org/846443006

Cr-Original-Commit-Position: refs/heads/master@{#312858}
Cr-Mirrored-From: https://chromium.googlesource.com/chromium/src
Cr-Mirrored-Commit: 471b74f430d7885283a7257de6923fdc86a94368